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당신이 개발자라면...
2014.10.10 15:07 | 바이오인포매틱스
유전체데이터를 다루는 툴이나 스크립트를 만들고자 한다면, 다음의 프로그램, 라이브러리를 눈여겨 보고 응용할 것. 재미있는것은 이제 클라우드상의 데이터도 htsjdk 라이브러리에서 직접 핸들링이 가능해진다는 것이다.


Tools for using picard and gatk with genomics API. getting reads from GA4GH genomics api and exposing them as SAMRecord "Iterable" resource. These will be used for subsequent work on enabling HTSJDK to use API data as input.
GA4GHPicardRunner wrapper around picard tools that allows for INPUTS inot Picard tools to be ga4gh:// usls.


java framework used by picard and GATK to access reads in bam files and variants in VCF files


Java tool set using htsjdk to perform tasks on fastq, sam, bam and vcf files. Loop-based code, son no (easy) multiprocessor support.


Java-framework future extending htsjdk with capabilities such as accessing pipleups. Defines a set of walkers for developers to extend to traverse bam or vcf files.


A set of tools using the GATK-framework for analysis of bam and vcf files.


C-framework for manipulation of BAM, CRAM, and VCF files.


Tool set built using htslib for manipulation of sam files.


C-framework further extending htslib.

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저작자 표시 비영리 동일 조건 변경 허락
Software enginner of GenomeCloud. Covers bioinformatics, computational biology, and life science informatics.
Posted in : 바이오인포매틱스 at 2014.10.10 15:07
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